bio 的反向依赖 以下 Gem 的最新版本需要 bio
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
16,397 下载
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
16,358 下载
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
15,962 下载
bio-graphics 1.4
Library for visualizing genomic regions
15,927 下载
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
15,843 下载
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
15,375 下载
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,040 下载
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,040 下载
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
15,011 下载
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
14,739 下载
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
14,508 下载
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
14,474 下载
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14,130 下载
exodb 0.1.3
A library for exome sequencing data management
14,074 下载
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,019 下载
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,019 下载
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
13,781 下载
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13,518 下载
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13,518 下载
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
13,008 下载
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
12,998 下载
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
12,507 下载
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
12,399 下载
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
12,194 下载
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12,162 下载
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12,021 下载
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
10,736 下载
semin-egor 0.9.3
A new ESST generator
10,649 下载
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
10,635 下载
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10,609 下载