bioの被依存関係 以下のgemの最新版はbioを必要としています
rbbt-sources 3.4.2
Data sources like PubMed, Entrez Gene, or Gene Ontology
240,630 ダウンロード数
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
224,031 ダウンロード数
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
130,611 ダウンロード数
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
123,869 ダウンロード数
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
120,686 ダウンロード数
bacterial-annotator 1.0.1
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
107,551 ダウンロード数
protk 1.4.4
Commandline tools for proteomics
99,204 ダウンロード数
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
87,416 ダウンロード数
bio-gadget 0.5.0
Gadgets for bioinformatics
84,299 ダウンロード数
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
80,517 ダウンロード数
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
77,725 ダウンロード数
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
75,943 ダウンロード数
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
61,415 ダウンロード数
ms-core 0.0.19
basic, shared functionality for mspire libraries.
56,236 ダウンロード数
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
48,629 ダウンロード数
crb-blast 0.6.9
See summary
47,568 ダウンロード数
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
45,929 ダウンロード数
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
45,857 ダウンロード数
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
42,579 ダウンロード数
full_lengther_next 1.0.6
FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
42,243 ダウンロード数
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
39,018 ダウンロード数
genevalidatorapp 2.1.8
A Web App wrapper for GeneValidator, a program for validating gene predictions.
38,692 ダウンロード数
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
37,779 ダウンロード数
genevalidator 2.1.5
The tool validates the input predicted genes and provides useful information (length va...
37,710 ダウンロード数
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
37,556 ダウンロード数
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
32,598 ダウンロード数
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
31,418 ダウンロード数
bio-faster 0.4.5
A fast parser for FastQ files
30,659 ダウンロード数
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
30,656 ダウンロード数
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
30,656 ダウンロード数