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Reverse dependencies for bio Latest version of the following gems require bio

rbbt-sources 3.4.2

Data sources like PubMed, Entrez Gene, or Gene Ontology

240,492 Downloads

mspire 0.10.8.0

mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...

223,859 Downloads

snp-search 2.12.0

Use the snp-search tool to create, import, manipulate and query your SNP database

130,587 Downloads

bio-samtools 2.6.2

Binder of samtools for ruby, on the top of FFI. This project was born from the need...

123,717 Downloads

bio-polyploid-tools 1.2.1

Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat

120,672 Downloads

bacterial-annotator 1.0.1

GEM to annotate bacterial genome sequence based on a reference genome and complete the ...

107,547 Downloads

protk 1.4.4

Commandline tools for proteomics

99,031 Downloads

parse_fasta 2.5.2

Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...

87,255 Downloads

bio-gadget 0.5.0

Gadgets for bioinformatics

84,293 Downloads

iroki 0.0.36

Command line app and library code for Iroki, a phylogenetic tree customization program.

80,497 Downloads

transrate 1.0.1

a library and command-line tool for quality assessment of de-novo transcriptome assemblies

77,702 Downloads

bio-ucsc-api 0.6.5

Ruby UCSC API: accessing the UCSC Genome Database using Ruby

75,928 Downloads

bio-svgenes 0.4.1

This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...

61,405 Downloads

ms-core 0.0.19

basic, shared functionality for mspire libraries.

56,211 Downloads

biointerchange 1.0.8

BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...

48,623 Downloads

crb-blast 0.6.9

See summary

47,555 Downloads

bio-gff3 0.9.1

GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...

45,853 Downloads

wrnap 1.2.2

A comprehensive wrapper w(RNA)pper for various RNA CLI programs.

45,850 Downloads

bio-basespace-sdk 0.1.7

BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...

42,571 Downloads

full_lengther_next 1.0.6

FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...

42,200 Downloads

bio-band 0.1.11

Data mining and machine learning algorithms for JRuby

39,000 Downloads

genevalidatorapp 2.1.8

A Web App wrapper for GeneValidator, a program for validating gene predictions.

38,691 Downloads

fasta_util 0.5.2

Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...

37,777 Downloads

genevalidator 2.1.5

The tool validates the input predicted genes and provides useful information (length va...

37,705 Downloads

rbfam 12.0.1.1

Light wrapper for RFam data in Ruby.

37,525 Downloads

bio-publisci 0.1.0

A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...

32,566 Downloads

ulla 0.9.9.2

'ulla' is a program for calculating environment-specific substitution tables from user ...

31,410 Downloads

bio-faster 0.4.5

A fast parser for FastQ files

30,657 Downloads

bio-ngs 0.5.2

bio-ngs provides a framework for handling NGS data with BioRuby

30,653 Downloads

bio-ngs 0.5.2

bio-ngs provides a framework for handling NGS data with BioRuby

30,653 Downloads

Total downloads 748,460

For this version 1,957

Version Released:

License:

Ruby

Required Ruby Version: >= 0

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