Reverse dependencies for bio Latest version of the following gems require bio
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
16.401 Downloads
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
16.382 Downloads
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
15.971 Downloads
bio-graphics 1.4
Library for visualizing genomic regions
15.929 Downloads
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
15.845 Downloads
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
15.396 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15.042 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15.042 Downloads
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
15.013 Downloads
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
14.740 Downloads
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
14.529 Downloads
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
14.476 Downloads
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14.157 Downloads
exodb 0.1.3
A library for exome sequencing data management
14.076 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14.020 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14.020 Downloads
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
13.782 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13.519 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13.519 Downloads
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
13.022 Downloads
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
13.001 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
12.511 Downloads
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
12.399 Downloads
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
12.195 Downloads
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12.172 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12.023 Downloads
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
10.738 Downloads
semin-egor 0.9.3
A new ESST generator
10.649 Downloads
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
10.637 Downloads
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10.609 Downloads