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bio-sam-mutation 0.4.1

Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for calling mutations in HGVS format and looking up consequences using Ensembl VEP REST API. Developed for calling mutations at an expected position in an alignment - e.g. Amplicon sequencing of CRISPR-induced mutations.

Gemfile:
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instalar:
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Versões:

  1. 0.4.1 February 08, 2016 (26,5 KB)

Runtime Dependencies (6):

bio >= 1.4.2
bio-samtools ~> 2.3.4
oj ~> 2.14
rake ~> 0.9
trollop >= 0

Development Dependencies (6):

bundler >= 0
jeweler ~> 2.0
rdoc ~> 3.12
shoulda >= 0
simplecov >= 0
test-unit ~> 3.0

Donos:

Autores:

  • Stephen Pettitt

SHA 256 checksum:

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Total de downloads 3.444

Desta versão 3.444

Versão lançada:

Licença:

MIT

Versão Requerida do Ruby: >= 0

Links: